back VDR_f2 HOCOMOCO-build9-MAR2012


UniProt VDR
motif weight115.0
total sequences120
data sources JASPAR:10
TRANSFAC20112:110
motif logo
consensusRGGTYAhnRRGKKSRb
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
   41.9324      2.843    66.6506      3.574 
    8.4477     2.9242    102.166     1.4621 
    0.6498     4.0614    84.6145    25.6743 
    5.5235     4.3863     8.8539    96.2363 
    3.0867    83.2336    10.8846    17.7952 
   100.129      3.574     6.2608     5.0361 
   39.3596    19.6087    18.6215    37.4101 
    23.264    35.4607     35.367    20.9084 
   30.0871     5.1377    70.0075     9.7677 
   59.5713     4.3051    48.2806      2.843 
    8.7726     3.0054   101.6786     1.5433 
    1.4621     0.7311    41.7512    71.0557 
    12.759     7.1481    15.7582    79.3347 
    6.3358     80.878    14.3774    13.4089 
   71.5243    12.6778    20.3195    10.4784 
   17.8733    47.9651    21.2849    27.8768 
PPM
     A          C          G          T    
    0.3646     0.0247     0.5796     0.0311 
    0.0735     0.0254     0.8884     0.0127 
    0.0057     0.0353     0.7358     0.2233 
     0.048     0.0381      0.077     0.8368 
    0.0268     0.7238     0.0946     0.1547 
    0.8707     0.0311     0.0544     0.0438 
    0.3423     0.1705     0.1619     0.3253 
    0.2023     0.3084     0.3075     0.1818 
    0.2616     0.0447     0.6088     0.0849 
     0.518     0.0374     0.4198     0.0247 
    0.0763     0.0261     0.8842     0.0134 
    0.0127     0.0064     0.3631     0.6179 
    0.1109     0.0622      0.137     0.6899 
    0.0551     0.7033      0.125     0.1166 
     0.622     0.1102     0.1767     0.0911 
    0.1554     0.4171     0.1851     0.2424 
PWM uniform
     A          C          G          T    
    0.3649    -2.0055      0.818    -1.8388 
   -1.1338    -1.9855     1.2391    -2.4251 
   -2.7914    -1.7413      1.053    -0.1084 
   -1.4955    -1.6812    -1.0925       1.18 
   -1.9468     1.0367    -0.9083    -0.4556 
    1.2192    -1.8388    -1.3913    -1.5709 
    0.3034    -0.3644     -0.413     0.2541 
   -0.2024     0.2023     0.1997    -0.3037 
    0.0437    -1.5547     0.8663    -1.0054 
    0.7078    -1.6959     0.5022    -2.0055 
   -1.1006     -1.966     1.2343    -2.3949 
   -2.4251    -2.7482     0.3607      0.881 
   -0.7639    -1.2787    -0.5691     0.9894 
   -1.3812     1.0084    -0.6541    -0.7184 
    0.8874    -0.7698    -0.3308    -0.9425 
   -0.4515     0.4958    -0.2868    -0.0296 
PWM hg19
     A          C          G          T    
    0.2148     -1.873     0.9981    -1.9526 
   -1.2681     -1.852     1.4202    -2.5076 
   -2.8435    -1.5968     1.2337    -0.2557 
    -1.621    -1.5344    -0.9294     1.0274 
    -2.056     1.2174    -0.7418    -0.5999 
    1.0665    -1.6983    -1.2352    -1.6942 
    0.1536    -0.1909      -0.24     0.1046 
    -0.349     0.3799     0.3773    -0.4495 
   -0.1046    -1.4036     1.0466    -1.1421 
    0.5564    -1.5497     0.6812    -2.1121 
   -1.2355    -1.8314     1.4155    -2.4794 
   -2.5076    -2.6744     0.5391      0.729 
   -0.9045    -1.1197    -0.3979     0.8372 
   -1.5099      1.189    -0.4839    -0.8595 
    0.7355    -0.6012     -0.157    -1.0803 
   -0.5958     0.6748    -0.1127    -0.1775