back VDR_f1 HOCOMOCO-build9-MAR2012


UniProt VDR
motif weight120.0
total sequences120
data sources JASPAR:10
TRANSFAC20112:110
motif logo
consensusRRGKTCA
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
   31.2777     6.2402    71.3788    11.1034 
   61.3374      1.459    57.2036        0.0 
       0.0        0.0   119.3516     0.6484 
       0.0      1.459    60.9405    57.6005 
    7.2139     0.8105     5.1875   106.7881 
       0.0    105.167    12.5635     2.2695 
  109.8521     0.5471     6.8652     2.7356
PPM
     A          C          G          T    
    0.2606      0.052     0.5948     0.0925 
    0.5111     0.0122     0.4767        0.0 
       0.0        0.0     0.9946     0.0054 
       0.0     0.0122     0.5078       0.48 
    0.0601     0.0068     0.0432     0.8899 
       0.0     0.8764     0.1047     0.0189 
    0.9154     0.0046     0.0572     0.0228
PWM uniform
     A          C          G          T    
    0.0401    -1.4338     0.8443    -0.9307 
    0.6954    -2.4636      0.627    -3.2606 
   -3.2606    -3.2606     1.3517    -2.8277 
   -3.2606    -2.4636      0.689     0.6338 
   -1.3108    -2.7435    -1.5865     1.2417 
   -3.2606     1.2265    -0.8185    -2.1972 
    1.2697    -2.8841    -1.3531    -2.0711
PWM hg19
     A          C          G          T    
   -0.1084    -1.2781     1.0246    -1.0692 
    0.5439    -2.3589     0.8066    -3.2606 
   -3.2606    -3.2606     1.5331    -2.8793 
   -3.2606    -2.3589     0.8688     0.4825 
   -1.4419    -2.6655    -1.4353     1.0889 
   -3.2606     1.4077    -0.6501    -2.2957 
    1.1168     -2.823    -1.1953    -2.1761