back SRF_do HOCOMOCO-build9-MAR2012


UniProt SRF
motif weight2176.0
total sequences2197
data sources HUDSONALPHACHIPSEQV2:2000
JASPAR:46
TRANSFAC20112:151
motif logo
consensusdCCWTATWWGGvMWd
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
  569.0518   188.1415   623.7866   795.0202 
   21.3452  2039.2803    72.5153    42.8591 
   21.2321  2082.1428     4.6683    67.9569 
 1151.3753    59.8314    16.0563    948.737 
  359.9681    25.0709    64.5122  1726.4489 
 1710.1113    20.3102   122.1193   323.4592 
  224.1252     62.205    55.3158   1834.354 
 1493.7504    76.6466    58.1073   547.4958 
  718.1867    56.7427   128.1849  1272.8857 
  116.4408     4.9001  2040.6196    14.0396 
   56.9308     9.8263  2073.5275    35.7154 
  384.2234   390.2329  1077.1807    324.363 
  617.3162  1236.6832   176.3026   145.6981 
 1544.2045    63.9611   266.5609   301.2735 
  319.9319   266.9501   450.2744  1138.8436 
PPM
     A          C          G          T    
    0.2615     0.0865     0.2867     0.3654 
    0.0098     0.9372     0.0333     0.0197 
    0.0098     0.9569     0.0021     0.0312 
    0.5291     0.0275     0.0074      0.436 
    0.1654     0.0115     0.0296     0.7934 
    0.7859     0.0093     0.0561     0.1486 
     0.103     0.0286     0.0254      0.843 
    0.6865     0.0352     0.0267     0.2516 
      0.33     0.0261     0.0589      0.585 
    0.0535     0.0023     0.9378     0.0065 
    0.0262     0.0045     0.9529     0.0164 
    0.1766     0.1793      0.495     0.1491 
    0.2837     0.5683      0.081      0.067 
    0.7097     0.0294     0.1225     0.1385 
     0.147     0.1227     0.2069     0.5234 
PWM uniform
     A          C          G          T    
    0.0449    -1.0551     0.1364     0.3783 
   -3.1555     1.3188    -1.9925    -2.5007 
   -3.1603     1.3396     -4.417    -2.0557 
    0.7479    -2.1793    -3.4133     0.5547 
   -0.4111    -3.0069    -2.1063     1.1525 
     1.143     -3.201    -1.4819    -0.5175 
   -0.8817    -2.1416    -2.2553      1.213 
    1.0079    -1.9385    -2.2077     0.0064 
    0.2769    -2.2306    -1.4341     0.8481 
   -1.5287    -4.3824     1.3195    -3.5323 
   -2.2274    -3.8388     1.3355    -2.6745 
   -0.3463    -0.3308     0.6814    -0.5147 
     0.126     0.8193    -1.1194    -1.3078 
     1.041    -2.1146    -0.7097    -0.5881 
   -0.5284    -0.7082    -0.1884      0.737 
PWM hg19
     A          C          G          T    
   -0.1092    -0.8738     0.3189      0.224 
   -3.2964     1.5017    -1.8138    -2.6482 
   -3.3012     1.5225    -4.2839    -2.2058 
    0.5935    -2.0015    -3.2483     0.4004 
   -0.5649    -2.8359    -1.9281      0.998 
    0.9885    -3.0325    -1.3014    -0.6712 
    -1.035    -1.9636    -2.0779     1.0585 
    0.8534    -1.7596      -2.03    -0.1477 
    0.1227    -2.0531    -1.2536     0.6937 
   -1.6807    -4.2476     1.5024    -3.6671 
   -2.3767    -3.6835     1.5183    -2.8207 
   -0.5001    -0.1486     0.8641    -0.6684 
   -0.0281      1.002    -0.9382    -1.4603 
    0.8866    -1.9365    -0.5279    -0.7417 
    -0.682    -0.5264     -0.006     0.5826