back RXRA_f1 HOCOMOCO-build9-MAR2012


UniProt RXRA
motif weight2753.08593
total sequences3193
data sources HUDSONALPHACHIPSEQV2:2000
JASPAR:864,10,25,23
TRANSFAC20112:271
motif logo
consensusRGGKCAvRGRbhd
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
 1552.5519    36.1998   1089.148    75.1862 
  115.3384     2.9153  2576.0013    58.8309 
  137.4198    12.3785  2350.8655   252.4221 
  150.5703   155.4737   565.6925  1881.3495 
   72.1064  2295.2329   329.4472    56.2994 
 2692.7302      5.855    42.3443    12.1565 
 1496.6181    295.088   689.0479    272.332 
 1841.5512   204.5655   564.0855   142.8837 
  339.3719    27.9152  2306.5882    79.2106 
  458.3988    61.8453  1941.5369    291.305 
  158.3822   308.1647   985.6394  1300.8997 
  441.2154  1452.1654   318.8539   540.8511 
 1629.1935   211.0179   413.7753   499.0992 
PPM
     A          C          G          T    
    0.5639     0.0131     0.3956     0.0273 
    0.0419     0.0011     0.9357     0.0214 
    0.0499     0.0045     0.8539     0.0917 
    0.0547     0.0565     0.2055     0.6834 
    0.0262     0.8337     0.1197     0.0204 
    0.9781     0.0021     0.0154     0.0044 
    0.5436     0.1072     0.2503     0.0989 
    0.6689     0.0743     0.2049     0.0519 
    0.1233     0.0101     0.8378     0.0288 
    0.1665     0.0225     0.7052     0.1058 
    0.0575     0.1119      0.358     0.4725 
    0.1603     0.5275     0.1158     0.1965 
    0.5918     0.0766     0.1503     0.1813 
PWM uniform
     A          C          G          T    
    0.8119    -2.8947     0.4579    -2.1911 
   -1.7722    -4.9488     1.3177    -2.4293 
   -1.5997    -3.8727     1.2263    -0.9981 
   -1.5096    -1.4779    -0.1955     1.0037 
   -2.2318     1.2024    -0.7336    -2.4718 
     1.362    -4.4784    -2.7455    -3.8883 
    0.7752    -0.8431     0.0011    -0.9228 
    0.9824    -1.2065    -0.1983    -1.5613 
   -0.7041    -3.1394     1.2073    -2.1403 
    -0.405    -2.3809     1.0352    -0.8559 
   -1.4596       -0.8     0.3582     0.6353 
    -0.443     0.7451    -0.7661    -0.2403 
      0.86    -1.1758     -0.507    -0.3203 
PWM hg19
     A          C          G          T    
    0.6574    -2.7204     0.6406    -2.3415 
    -1.924    -4.8358     1.5006    -2.5785 
    -1.752     -3.713     1.4092    -1.1515 
   -1.6621     -1.297    -0.0131     0.8493 
    -2.382     1.3853    -0.5516    -2.6208 
    1.2075    -4.3386      -2.57    -4.0198 
    0.6208    -0.6612     0.1837    -1.0762 
    0.8279    -1.0251    -0.0159    -1.7136 
   -0.8578    -2.9675     1.3902    -2.2908 
   -0.5589    -2.2031     1.2181    -1.0094 
   -1.6122     -0.618     0.5409     0.4809 
    -0.597     0.9279    -0.5841    -0.3943 
    0.7055    -0.9943    -0.3247    -0.4743