back RARA_f1 HOCOMOCO-build9-MAR2012


UniProt RARA
motif weight57.98758
total sequences130
data sources JASPAR:23
TRANSFAC20112:107
motif logo
consensusvAGGTCA
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
   11.0935    19.5567    22.6211     4.7163 
   57.9876        0.0        0.0        0.0 
       0.0        0.0    57.9876        0.0 
       0.0        0.0    57.9876        0.0 
       0.0        0.0        0.0    57.9876 
       0.0    57.9876        0.0        0.0 
   57.9876        0.0        0.0        0.0
PPM
     A          C          G          T    
    0.1913     0.3373     0.3901     0.0813 
       1.0        0.0        0.0        0.0 
       0.0        0.0        1.0        0.0 
       0.0        0.0        1.0        0.0 
       0.0        0.0        0.0        1.0 
       0.0        1.0        0.0        0.0 
       1.0        0.0        0.0        0.0
PWM uniform
     A          C          G          T    
   -0.2477     0.2823     0.4212    -0.9957 
     1.336    -2.7267    -2.7267    -2.7267 
   -2.7267    -2.7267      1.336    -2.7267 
   -2.7267    -2.7267      1.336    -2.7267 
   -2.7267    -2.7267    -2.7267      1.336 
   -2.7267      1.336    -2.7267    -2.7267 
     1.336    -2.7267    -2.7267    -2.7267
PWM hg19
     A          C          G          T    
   -0.3884     0.4571      0.597    -1.1211 
    1.1842    -2.7267    -2.7267    -2.7267 
   -2.7267    -2.7267     1.5161    -2.7267 
   -2.7267    -2.7267     1.5161    -2.7267 
   -2.7267    -2.7267    -2.7267     1.1842 
   -2.7267     1.5161    -2.7267    -2.7267 
    1.1842    -2.7267    -2.7267    -2.7267