back GABPA_f1 HOCOMOCO-build9-MAR2012


UniProt GABPA
motif weight2749.95255
total sequences3042
data sources HUDSONALPHACHIPSEQV2:2000
JASPAR:993
TRANSFAC20112:49
motif logo
consensusvvvCCGGAAGYSv
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
  615.2573   697.0699  1261.1903   176.4351 
   996.493   805.1879   693.7696   254.5021 
 1106.9888   508.1944   1029.833   104.9363 
  143.7121  2086.4279   518.3751     1.4374 
  362.9541  2369.4739     17.237     0.2875 
       0.0        0.0  2749.9525        0.0 
       0.0        0.0  2749.9525        0.0 
 2748.2568     1.6958        0.0        0.0 
 2726.6484     1.1499     1.1499    21.0043 
   202.057    28.7994  2518.8087     0.2875 
  172.9289    521.124    106.382  1949.5176 
  398.1679   424.2094  1706.4024   221.1728 
  764.2588   675.0884  1066.5414    244.064 
PPM
     A          C          G          T    
    0.2237     0.2535     0.4586     0.0642 
    0.3624     0.2928     0.2523     0.0925 
    0.4025     0.1848     0.3745     0.0382 
    0.0523     0.7587     0.1885     0.0005 
     0.132     0.8616     0.0063     0.0001 
       0.0        0.0        1.0        0.0 
       0.0        0.0        1.0        0.0 
    0.9994     0.0006        0.0        0.0 
    0.9915     0.0004     0.0004     0.0076 
    0.0735     0.0105     0.9159     0.0001 
    0.0629     0.1895     0.0387     0.7089 
    0.1448     0.1543     0.6205     0.0804 
    0.2779     0.2455     0.3878     0.0888 
PWM uniform
     A          C          G          T    
   -0.1107     0.0138     0.6055    -1.3518 
    0.3703     0.1576     0.0091    -0.9889 
    0.4753    -0.3012     0.4032    -1.8639 
   -1.5544     1.1082    -0.2814    -5.3071 
   -0.6362     1.2353    -3.5801    -5.7173 
   -5.8529    -5.8529     1.3841    -5.8529 
   -5.8529    -5.8529     1.3841    -5.8529 
    1.3835    -5.2342    -5.8529    -5.8529 
    1.3756     -5.395     -5.395    -3.4011 
   -1.2176    -3.1091     1.2964    -5.7173 
   -1.3717    -0.2761    -1.8504     1.0404 
   -0.5441     -0.481     0.9074    -1.1281 
    0.1056    -0.0181     0.4381    -1.0304 
PWM hg19
     A          C          G          T    
   -0.2648     0.1964     0.7882    -1.5046 
     0.216     0.3402     0.1916    -1.1422 
    0.3209    -0.1188     0.5859    -2.0154 
   -1.7068     1.2911     -0.099    -5.3693 
     -0.79     1.4182    -3.4145    -5.7357 
   -5.8529    -5.8529     1.5671    -5.8529 
   -5.8529    -5.8529     1.5671    -5.8529 
     1.229    -5.1456    -5.8529    -5.8529 
    1.2211    -5.3238    -5.3238    -3.5415 
   -1.3707    -2.9369     1.4793    -5.7357 
   -1.5244    -0.0937    -1.6705     0.8859 
   -0.6979    -0.2988     1.0902    -1.2812 
   -0.0487     0.1644     0.6208    -1.1837