Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif UBX comparison [dmmpmm_compare_html]

motif alignment Bigfoot Bergman Down Noyes Noyes_hd Pollard SeSiMCMC motif similarity Bigfoot Pollard Down Bergman SeSiMCMC Noyes Noyes_hd Bigfoot 1.0 0.7637 0.1551 0.0 0.409 0.3609 0.2999 Pollard 0.7637 1.0 0.1616 0.0 0.4268 0.4355 0.3536 Down 0.1551 0.1616 1.0 0.0 0.2149 0.1744 0.1787 Bergman 0.0 0.0 0.0 0.0 0.0 0.0 0.0 SeSiMCMC 0.409 0.4268 0.2149 0.0 1.0 0.3867 0.3433 Noyes 0.3609 0.4355 0.1744 0.0 0.3867 1.0 0.6685 Noyes_hd 0.2999 0.3536 0.1787 0.0 0.3433 0.6685 1.0