Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif TIN comparison [dmmpmm_compare_html]

motif alignment Bigfoot Bergman Down Noyes_hd Papatsenko Pollard SeSiMCMC motif similarity Bigfoot Pollard Down Bergman SeSiMCMC Papatsenko Noyes_hd Bigfoot 1.0 0.3555 0.3484 0.8544 0.4124 0.4391 0.466 Pollard 0.3555 1.0 0.6539 0.3371 0.7281 0.2829 0.4729 Down 0.3484 0.6539 1.0 0.3335 0.7752 0.257 0.48 Bergman 0.8544 0.3371 0.3335 1.0 0.3914 0.4434 0.4988 SeSiMCMC 0.4124 0.7281 0.7752 0.3914 1.0 0.3191 0.5253 Papatsenko 0.4391 0.2829 0.257 0.4434 0.3191 1.0 0.3317 Noyes_hd 0.466 0.4729 0.48 0.4988 0.5253 0.3317 1.0