Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif KNI comparison [dmmpmm_compare_html]

motif alignment

Bigfoot
Down
Noyes
Papatsenko
Pollard
SeSiMCMC

motif similarity

Bigfoot Pollard Down SeSiMCMC Papatsenko Noyes
Bigfoot 1.0 0.2 0.052 0.7721 0.0588 0.2434
Pollard 0.2 1.0 0.0227 0.1732 0.0398 0.1469
Down 0.052 0.0227 1.0 0.0487 0.1199 0.0325
SeSiMCMC 0.7721 0.1732 0.0487 1.0 0.0517 0.2341
Papatsenko 0.0588 0.0398 0.1199 0.0517 1.0 0.0392
Noyes 0.2434 0.1469 0.0325 0.2341 0.0392 1.0