Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif EN comparison [dmmpmm_compare_html]

motif alignment Bigfoot Bergman Down Noyes Noyes_hd Pollard SeSiMCMC motif similarity Bigfoot Pollard Down Bergman SeSiMCMC Noyes Noyes_hd Bigfoot 1.0 0.4412 0.5026 0.4494 0.5779 0.3981 0.4141 Pollard 0.4412 1.0 0.2583 0.329 0.5076 0.3138 0.3438 Down 0.5026 0.2583 1.0 0.4254 0.3388 0.366 0.3501 Bergman 0.4494 0.329 0.4254 1.0 0.3692 0.5553 0.5149 SeSiMCMC 0.5779 0.5076 0.3388 0.3692 1.0 0.3385 0.3803 Noyes 0.3981 0.3138 0.366 0.5553 0.3385 1.0 0.6897 Noyes_hd 0.4141 0.3438 0.3501 0.5149 0.3803 0.6897 1.0