Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif BR_Z2 comparison [dmmpmm_compare_html]

motif alignment

Bigfoot
Bergman
Down
Pollard
SeSiMCMC

motif similarity

Bigfoot Pollard Down Bergman SeSiMCMC
Bigfoot 1.0 0.3415 0.1427 0.1999 0.2676
Pollard 0.3415 1.0 0.1513 0.1802 0.2203
Down 0.1427 0.1513 1.0 0.1563 0.0812
Bergman 0.1999 0.1802 0.1563 1.0 0.3668
SeSiMCMC 0.2676 0.2203 0.0812 0.3668 1.0