Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif BRK comparison [dmmpmm_compare_html]

motif alignment Bigfoot Bergman Down Papatsenko Pollard SeSiMCMC motif similarity Bigfoot Pollard Down Bergman SeSiMCMC Papatsenko Bigfoot 1.0 0.5439 0.4139 0.4108 0.3367 0.5219 Pollard 0.5439 1.0 0.6582 0.4346 0.483 0.8675 Down 0.4139 0.6582 1.0 0.3279 0.3724 0.6367 Bergman 0.4108 0.4346 0.3279 1.0 0.3065 0.4206 SeSiMCMC 0.3367 0.483 0.3724 0.3065 1.0 0.4859 Papatsenko 0.5219 0.8675 0.6367 0.4206 0.4859 1.0