Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif BCD comparison [dmmpmm_compare_html]

motif alignment Bigfoot Bergman Down Noyes Noyes_hd Papatsenko Pollard SeSiMCMC motif similarity Bigfoot Pollard Down Bergman SeSiMCMC Papatsenko Noyes Noyes_hd Bigfoot 1.0 0.883 0.6113 0.3677 0.8677 0.5421 0.7008 0.3982 Pollard 0.883 1.0 0.6084 0.3743 0.8965 0.588 0.7356 0.407 Down 0.6113 0.6084 1.0 0.3073 0.6183 0.5365 0.6281 0.3884 Bergman 0.3677 0.3743 0.3073 1.0 0.381 0.4029 0.3511 0.4252 SeSiMCMC 0.8677 0.8965 0.6183 0.381 1.0 0.5749 0.6935 0.4134 Papatsenko 0.5421 0.588 0.5365 0.4029 0.5749 1.0 0.517 0.5157 Noyes 0.7008 0.7356 0.6281 0.3511 0.6935 0.517 1.0 0.3869 Noyes_hd 0.3982 0.407 0.3884 0.4252 0.4134 0.5157 0.3869 1.0