Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif AP comparison [dmmpmm_compare_html]

motif alignment Bigfoot Bergman Down Noyes_hd Pollard SeSiMCMC motif similarity Bigfoot Pollard Down Bergman SeSiMCMC Noyes_hd Bigfoot 1.0 0.6211 0.4553 0.4031 0.6163 0.3779 Pollard 0.6211 1.0 0.3233 0.4953 0.6529 0.3503 Down 0.4553 0.3233 1.0 0.2786 0.3764 0.199 Bergman 0.4031 0.4953 0.2786 1.0 0.4292 0.3769 SeSiMCMC 0.6163 0.6529 0.3764 0.4292 1.0 0.3605 Noyes_hd 0.3779 0.3503 0.199 0.3769 0.3605 1.0